Glyma03g32900 - SoyBase

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Report for Sequence Feature Glyma03g32900

Feature Type:	gene_model
Chromosome:	Gm03
Start:	40623066
stop:	40634673
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g32900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G53720	AT	Annotation by Michelle Graham. TAIR10: cation/H+ exchanger 20 \| chr3:19905826-19910027 REVERSE LENGTH=842	SoyBase	E_val: 0	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006812	GO-bp	Annotation by Michelle Graham. GO Biological Process: cation transport	SoyBase	N/A	ISS
GO:0006885	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of pH	SoyBase	N/A	ISS
GO:0030007	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular potassium ion homeostasis	SoyBase	N/A	ISS
GO:0030104	GO-bp	Annotation by Michelle Graham. GO Biological Process: water homeostasis	SoyBase	N/A	ISS
GO:0035725	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0012505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endomembrane system	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005451	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation transport	SoyBase	N/A	ISS
GO:0015299	GO-mf	Annotation by Michelle Graham. GO Molecular Function: solute:hydrogen antiporter activity	SoyBase	N/A	ISS
GO:0015385	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sodium:hydrogen antiporter activity	SoyBase	N/A	ISS
KOG1650	KOG	Predicted K+/H+-antiporter	JGI		ISS
PTHR16254	Panther	POTASSIUM/PROTON ANTIPORTER-RELATED	JGI		ISS
PF00999	PFAM	Sodium/hydrogen exchanger family	JGI		ISS
UniRef100_G7KZN0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: K(+)/H(+) antiporter n=1 Tax=Medicago truncatula RepID=G7KZN0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336E81	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336E81 related cluster n=1 Tax=unknown RepID=UPI0002336E81	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma03g32900

Locus	Gene Symbol	Protein Name
	SALT3	K+/H+ antiporter gene 1
	CHX1	cation H+ exchanger

Expression Patterns of Glyma03g32900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g32900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma03g32900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g32900

Limit To All Plant Sequences

>Glyma03g32900.1   sequence type=CDS   gene model=Glyma03g32900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGTTCAACGCGAGCACCATCACAACGGCGTCGGAAGGAGCCTGGCAGGGCGATAATCCCCTGAACCACGCTCTTCCTTTGTTGATCGTTCAAACCATCCTCGTAGTCTTCGTGAGCCGCACACTCGCCTTTCTCCTCAAACCCTTTCGTCAACCTAAAGTTGTCGCCGAGATTATTGGTGGAATTTTGTTGGGGCCTTCTGCTATTGGGCGCAACAAGAAATTCATGCACATAGTGTTCCCAGCATGGAGCACTACCATGCTGGAATCAGTGGCAAGCTTCGGCCTCTTATTCTATCTATTTCTGGTGGGCCTAGAGCTCGACTTTCGCACCATTCGCCGGAGCGGCAAGCAAGCCTTCAACATCGCGGTGGCCGGAATAACCCTCCCCTTCATCTGCGCCGTGGGAGTAACGTTCCTTCTCCAGAGAGCCATCCGCTCTGAAAACCATAACATAGGGTACGTTCAGCACTTCGTGTTCTTAGGGGTATCTCTGTCCATCACGGCTTTCCCTGTGCTCGCGCGCATCTTAGCGGAGCTCAAACTGCTGACCACACGTGTGGGAGAAACCGCCATGGCGGCTGCAGCCTTCAACGACGTCGCTGCGTGGGTTTTGTTGGCCTTGGCGGTGGCTTTGGCTGGCCAGGGACACAAAAGCAGCTTGTTGACATCAATATGGGTGCTCTTCTCAGGGATGGCGTTTGTTGCAGCCATGATGATCCTGGTTCGACCGGTGATGAACCGTGTTGCTCGCAAGTGTTCTCACGAACAAGACGTGTTACCCGAAATCTACATATGTTTAACTCTAGCGGGAGTAATGTTATCGGGGTTAGTGACAGACATGATAGGGTTACATTCAATTTTCGGGGGATTTGTTTTCGGGCTAACGATACCGAAAGGTGGCGAATTTGCAAATAGAATGACGAGGAGGATTGAGGACTTCGTGTCCACGTTGTTCCTTCCCTTGTACTTTGCTGCCAGTGGTTTGAAAACTGACGTGACTAAGTTACGAAGCGTGGTGGATTGGGGGCTTCTTTTGCTGGTTACGTCCACCGCGAGCGTGGGGAAGATTTTGGGAACGTTTGCCGTGGCGATGATAGAATCCTTGACGCTTGGAGTGTTAATGAACACCAAAGGGTTGGTGGAGCTAATCGTTCTCAATATTGGCAGAGAGAAGAAGGTGATTTCACCTTGTGTTTTTGTGCGATTATATTTGATTACACTAAATATGGTGGCTAAGCAGGTGCTTAACGACGAGATGTTTACCATCCTAGTACTCATGGCTCTCTTCACCACCTTCATTACAACTCCAATAGTCTTGGCCATATACAAACCCTCTCGTATAGTAAACTCCGGTTCGCAAAAACCGTCGCGGCTAACAGATTTGCAAGAGAAGCTTCGCATTCTTGCGTGCATCCATGGACCTGGCAACATACCCTCACTAATCAACTTCGTTGAATCAATTCGGGCCACCAACATGTCACGACTCAAACTCTACGTGATGCAACTTACCGAACTCACTGATAGCTCTTCCTCCATCTTGATGGTTCAACGCAGTCGAAAGAATGGTTTTCCCTTCATCAACCGAATGAAGAGTGGACCAATGCATGAGCAAATTGCCACAGCATTCCAGGCTTATGGTGAAGTGGGTAAAGTTACTGTGCATCATTTAACATCTATCTCTCTATTGTCAACAATGCACGAGGACATATGCCACGTTGCAGAAAAGAAAGGTGTGGCAATGATTATATTGCCCTTCCACAAAAGGTGGGGAGGGGAAGATGAAGAGGTGACAGAAGACTTAGGGCAGGGTTTGAGGGAAGTCAATCAAAGGGTGCTTCAAAATGCAGCCTGCTCTGTCGCAGTGCTAGTCAATCGTGGGGTTGCCAGAAGGTACGAACAAGAACCTGAGACAAGTGTTGCTGCAAGGAAAAGAGTGTGCATATTTTTCATTGGTGGACCACATGATCGCAAGGTTTTGGAGTTAGGTAGCAGAATGGCAGAGCATCCAGCAATTAGGTTGCTTTTAGTGAGATTCACTTCATACACAGAAGTTGGGGACGAGGGACCCAAATATAACTCACCAACATCAACCACCAACTGGGAAAAAGAAAAGGAGTTGGATGAGGAAGCAGTAAACGAGTTCAAGGTTAAATGGCAGGAGACTGTGGAGTACATTGAAAAGAACGCAACCAACATAACAGAGGAGGTGTTATCAATTGGGAAAGCTAAGGATCACGACCTAGTAATTGTGGGGAAGCAACAACTTGAGACAACCATGTTGACAAACATAGATTTTCGTCACGGGAATGAAGAGCTGGGACCCATTGGAGATCTCTTTGTCTCTTCGGGTAACGGCATTACCAGTTCATTGCTCGTTATACAGGACCGATATTTGATAAATTCAAACGAAACATCCTGCGTGTACGATGACAACCCTCCCCCAATCTCACGTGCTGTATTTTGA

Predicted protein sequences of Glyma03g32900

Limit To All Plant Sequences

>Glyma03g32900.1   sequence type=predicted peptide   gene model=Glyma03g32900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTFNASTITTASEGAWQGDNPLNHALPLLIVQTILVVFVSRTLAFLLKPFRQPKVVAEIIGGILLGPSAIGRNKKFMHIVFPAWSTTMLESVASFGLLFYLFLVGLELDFRTIRRSGKQAFNIAVAGITLPFICAVGVTFLLQRAIRSENHNIGYVQHFVFLGVSLSITAFPVLARILAELKLLTTRVGETAMAAAAFNDVAAWVLLALAVALAGQGHKSSLLTSIWVLFSGMAFVAAMMILVRPVMNRVARKCSHEQDVLPEIYICLTLAGVMLSGLVTDMIGLHSIFGGFVFGLTIPKGGEFANRMTRRIEDFVSTLFLPLYFAASGLKTDVTKLRSVVDWGLLLLVTSTASVGKILGTFAVAMIESLTLGVLMNTKGLVELIVLNIGREKKVISPCVFVRLYLITLNMVAKQVLNDEMFTILVLMALFTTFITTPIVLAIYKPSRIVNSGSQKPSRLTDLQEKLRILACIHGPGNIPSLINFVESIRATNMSRLKLYVMQLTELTDSSSSILMVQRSRKNGFPFINRMKSGPMHEQIATAFQAYGEVGKVTVHHLTSISLLSTMHEDICHVAEKKGVAMIILPFHKRWGGEDEEVTEDLGQGLREVNQRVLQNAACSVAVLVNRGVARRYEQEPETSVAARKRVCIFFIGGPHDRKVLELGSRMAEHPAIRLLLVRFTSYTEVGDEGPKYNSPTSTTNWEKEKELDEEAVNEFKVKWQETVEYIEKNATNITEEVLSIGKAKDHDLVIVGKQQLETTMLTNIDFRHGNEELGPIGDLFVSSGNGITSSLLVIQDRYLINSNETSCVYDDNPPPISRAVF*

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